https://biowerkzeug.org/index.php?action=history&feed=atom&title=AmberAmber - Revision history2026-04-21T16:23:34ZRevision history for this page on the wikiMediaWiki 1.45.3https://biowerkzeug.org/index.php?title=Amber&diff=79&oldid=prevOrbeckst: basic Amber stuff (mostly from Amber homepage)2008-06-30T20:06:51Z<p>basic Amber stuff (mostly from Amber homepage)</p>
<p><b>New page</b></p><div>'''[http://amber.scripps.edu/ Amber]''' (Assisted Model Building with Energy Refinement) refers to two things: a set of [http://amber.scripps.edu/#ff molecular mechanical force fields] for the simulation of biomolecules <cite>Ponder2003,Cheatham2001</cite> (which are in the public domain, and are used in a variety of simulation programs); and a [http://amber.scripps.edu/#code package of molecular simulation programs] <cite>Case2005</cite> which includes source code and demos. The current version of the code is Amber version 10, which is distributed by UCSF subject to a [http://amber.scripps.edu/#obtain licensing agreement].<br />
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Amber is now distributed in two parts: [http://amber.scripps.edu/#AmberTools AmberTools] and [http://amber.scripps.edu/#Amber10 Amber10]. You can use AmberTools without Amber10, but not vice versa.<br />
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== Documentation ==<br />
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== Tutorials ==<br />
* [http://amber.scripps.edu/tutorials/ Beginners' and Advanced Tutorials]<br />
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== References ==<br />
<biblio><br />
#Case2005 pmid=16200636<br />
#Ponder2003 pmid=14631816<br />
#Cheatham2001 pmid=11754338<br />
</biblio></div>Orbeckst