Visualization software: Difference between revisions
From Biowerkzeug Wiki
Jump to navigationJump to search
new; copied from Woolf wiki |
|||
| Line 2: | Line 2: | ||
== Molecules in 3D == | == Molecules in 3D == | ||
* [[VMD]]; also has extensive analysis and model | * [[VMD]]; also has extensive analysis and model building capabilities | ||
* [[pyMol]] | * [[pyMol]] | ||
* [[chimera]] | * [[chimera]] | ||
Latest revision as of 19:35, 30 June 2008
This page collects software that we find useful to display data from running molecular simulations. A special section is dedicated to Render software that create photorealistic or artistic images from scenes exported from other visualization software.
Molecules in 3D
- VMD; also has extensive analysis and model building capabilities
- pyMol
- chimera
- yasara
- QuteMol
- pyQuteMol
1D and 2D data
- xfarbe, a simple 2D plotter
- xmgrace, for 1D plots and some graph analysis
- gnuplot
- matplotlib, a python based scientific plotting library
- R
3D data
To display 3D data such as densities, you can use a typically insanely powerful 3D visualization package; see for instance this list of graphics packages.
- OpenDX: list of documentation and native DX file format
- viewers based on VTK such as MayaVi
- VMD and Chimera
