Main Page

This Wiki discusses biomolecular simulations with Hippo and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the forums. Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips & tricks – share them with everyone else. If you have comments on any article in this Wiki – start a discussion on the discussion page that accompanies every article (look in the top menu bar). We only ask you to register when you edit pages. See Help→Editing to get started on contributing to this community resource. Follow the links below, use the search on the left, or browse articles by category.

Hippo Simulations Analysis Graphical interface Files and features Methods Molecular dynamics Monte Carlo Force fields Algorithms Solvents Membranes

Simulation protocols Globular proteins in solvent Membrane proteins in membrane and solvent Free energy calculations Transition path sampling Visualization Software tutorial with VMD Movie tutorial Software Molecular dynamics codes Monte Carlo codes Electrostatics and Brownian dynamics Model building Visualization Analysis software