Difference between revisions of "Main Page"

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This Wiki discusses biomolecular simulations with [[Hippo]] and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the [http://forums.biowerkzeug.org forums].  
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This Wiki discusses biomolecular simulations with '''[[Hippo]]''' and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the [http://forums.biowerkzeug.org forums].
  
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Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips and tricks – share them with everyone else. If you have comments on any article in this Wiki – start a discussion on the ''discussion'' page that accompanies every article (look in the top menu bar). We only ask you to [[Special:Userlogin|register]] when you edit pages. See [[Help:Editing|Help&rarr;Editing]] to get started on contributing to this community resource.
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Follow the links below, use the search on the left, or browse articles by [[Special:Categories|category]].
  
 
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<div id="Hippo" class="hauptseite-links">
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== Hippo ==
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<div class="inhalt">
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[[Image:Hippopotamus.jpg|thumb|right|Not this hippo.]]
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* [[Hippo|Features]]
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* [[Download]]
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* [[Simulations]]
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* [[Analysis]]
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* [[Graphical interface]]
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* [[Files]]
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* [[Performance]]
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</div>
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<div id="Methods" class="hauptseite-links">
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== Methods ==
 
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<div class="inhalt">
== Molecular Mechanics ==
 
 
* [[Molecular dynamics]]
 
* [[Molecular dynamics]]
 
* [[Monte Carlo]]
 
* [[Monte Carlo]]
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* [[Solvents]]
 
* [[Solvents]]
 
* [[Membranes]]
 
* [[Membranes]]
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== Hippo ==
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<div id="Simulation protocols" class="hauptseite-rechts">
* [[Simulations]]
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== Simulation protocols ==
* [[Analysis]]
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<div class="inhalt">
* [[Graphical interface]]
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* [[Globular proteins]] in solvent
* [[Files and features]]
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* [[Membrane proteins]] in membrane and solvent
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* [[Free energy calculations]]
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* [[Transition path sampling]]
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</div>
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</div>
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<div id="Visualization" class="hauptseite-rechts">
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== Visualization ==
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<div class="inhalt">
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* [[Visualization software|Software]]
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* [[Visualization tutorial|tutorial]] with [[VMD]]
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* [[Movie tutorial]]
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</div>
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</div>
  
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== Getting started ==
 
  
* [http://meta.wikimedia.org/wiki/Help:Contents User's Guide]
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== Software ==
* [http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
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<div class="inhalt">
* [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
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* [[Molecular dynamics codes]]
* [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
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* [[Monte Carlo codes]]
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* [[Electrostatics]] and [[Brownian dynamics]]
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* [[Model building]]
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* [[Visualization software|Visualization]]
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* [[Analysis software]]
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</div>
  
 
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__NOTOC__

Latest revision as of 15:08, 18 November 2008

This Wiki discusses biomolecular simulations with Hippo and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the forums.

Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips and tricks – share them with everyone else. If you have comments on any article in this Wiki – start a discussion on the discussion page that accompanies every article (look in the top menu bar). We only ask you to register when you edit pages. See Help→Editing to get started on contributing to this community resource.

Follow the links below, use the search on the left, or browse articles by category.

Simulation protocols

Visualization